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GrainGenes Marker Report: POPA1_0552

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Locus	POPA1_0552
Type	SNP
Synonym	Other name 11_10552 BOPA1_11_10552 BOPA1_3845-1089 Synonym 11_10552
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 59.71 Hordeum-OPA123-2008-1H 59.71 Hordeum-OPAConsensus-2011-1H 54.54
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2095 i_11_10552
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0552 Marker name in barley OPA1 = 11_10552 Original SNP name = 3845-1089 Most representative HarvEST:Barley Assembly #32 Unigene = 3845 Most representative HarvEST:Barley Assembly #35 Unigene = 2095 HarvEST Unigene 35 Probe Set = Contig5337_at Unigene 35 Rice Locus = LOC_Os08g37874 Description for best rice BLAST hit to Unigene 35 member = oxidoreductase, putative, expressed; E value = 1E-170 Original SNP name = OSU_Aglu3_304 Description for best rice BLAST hit to Unigene 35 member = protein oxidoreductase, putative, expressed; E value = 1E-170 BLAST hit in the rice genome = oxidoreductase, putative, expressed
Probe for Locus	HAR35_2095
Locus	POPA1_0552
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare