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GrainGenes Marker Report: POPA1_0551

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Locus	POPA1_0551
Type	SNP
Synonym	Other name 11_10551 BOPA1_11_10551 BOPA1_3840-348 Synonym 11_10551
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 139.65 Hordeum-OPA123-2008-2H 139.65 Hordeum-OPAConsensus-2011-2H 156.77
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16569 i_11_10551
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0551 Marker name in barley OPA1 = 11_10551 Original SNP name = 3840-348 Most representative HarvEST:Barley Assembly #32 Unigene = 3840 Most representative HarvEST:Barley Assembly #35 Unigene = 16569 HarvEST Unigene 35 Probe Set = Contig5348_s_at Unigene 35 Rice Locus = LOC_Os04g54280 Description for best rice BLAST hit to Unigene 35 member = retrotransposon protein, putative, unclassified; E value = 9E-32 Description for best rice BLAST hit to Unigene 35 member = protein retrotransposon protein, putative, unclassified; E value = 9E-32 BLAST hit in the rice genome = retrotransposon protein, putative, unclassified
Probe for Locus	HAR35_16569
Locus	POPA1_0551
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare