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GrainGenes Marker Report: POPA1_0523

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Locus	POPA1_0523
Type	SNP
Synonym	Synonym 11_10523
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 78.77 Hordeum-OPA123-2008-4H 78.77 Hordeum-OPAConsensus-2011-4H 88.3
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_2866
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0523 Marker name in barley OPA1 = 11_10523 Original SNP name = 3704-1947 Most representative HarvEST:Barley Assembly #32 Unigene = 3704 Most representative HarvEST:Barley Assembly #35 Unigene = 2866 HarvEST Unigene 35 Probe Set = Contig5198_s_at; Contig5201_at Unigene 35 Rice Locus = LOC_Os03g06230 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 7E-54 HarvEST Unigene 35 Probe Set = Contig5198_s_at, Contig5201_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 7E-54 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_2866
Locus	POPA1_0523
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare