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GrainGenes Marker Report: POPA1_0469

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Locus	POPA1_0469
Type	SNP
Synonym	Other name 11_10469 BOPA1_11_10469 BOPA1_3436-354 Synonym 11_10469
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 69.3 Hordeum-OPA-2009-6H 72.54 Hordeum-OPA123-2008-6H 72.54 Hordeum-OPAConsensus-2011-6H 81.79
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16179 i_11_10469
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0469 Marker name in barley OPA1 = 11_10469 Original SNP name = 3436-354 Most representative HarvEST:Barley Assembly #32 Unigene = 3436 Most representative HarvEST:Barley Assembly #35 Unigene = 16179 HarvEST Unigene 35 Probe Set = Contig4806_at; HVSMEg0011O06r2_s_at Unigene 35 Rice Locus = LOC_Os10g22590 Description for best rice BLAST hit to Unigene 35 member = pollen-specific protein C13 precursor, putative, expressed; E value = 2E-71 HarvEST Unigene 35 Probe Set = Contig4806_at, HVSMEg0011O06r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein pollen-specific protein C13 precursor, putative, expressed; E value = 2E-71 BLAST hit in the rice genome = pollen-specific protein C13 precursor, putative, expressed
Probe for Locus	HAR35_16179
Locus	POPA1_0469
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare