Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0408

[Submit comment/correction]

Locus	POPA1_0408
Type	SNP
Synonym	Other name 12_10408 BOPA2_12_10408 Synonym 12_10408
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 84.4 Hordeum-OPA-2009-5H 102.06 Hordeum-OPA123-2008-5H 102.06 Hordeum-OPAConsensus-2011-5H 90.07
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2589 i_12_10408
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0408 Marker name in barley OPA1 = 12_10408 Original SNP name = 3018-1012 Most representative HarvEST:Barley Assembly #32 Unigene = 3018 Most representative HarvEST:Barley Assembly #35 Unigene = 2589 HarvEST Unigene 35 Probe Set = HT08B01u_s_at Unigene 35 Rice Locus = LOC_Os09g32690 Description for best rice BLAST hit to Unigene 35 member = ubiquitin-protein ligase/ zinc ion binding protein, putative, expressed; E value = 5E-67 Marker name in barley OPA2 = 12_10408 Description for best rice BLAST hit to Unigene 35 member = protein ubiquitin-protein ligase/ zinc ion binding protein, putative, expressed; E value = 5E-67 BLAST hit in the rice genome = ubiquitin-protein ligase/ zinc ion binding protein, putative, expressed
Probe for Locus	HAR35_2589
Locus	POPA1_0408
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare