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GrainGenes Marker Report: POPA1_0407

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Locus	POPA1_0407
Type	SNP
Synonym	Other name 11_10407 BOPA1_11_10407 BOPA1_3014-914 Synonym 11_10407
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 71.12 Hordeum-OPA123-2008-2H 71.12 Hordeum-OPAConsensus-2011-2H 82.44 Hordeum-OWB-OPA2008-2H 85.917
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_15621 i_11_10407
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0407 Marker name in barley OPA1 = 11_10407 Original SNP name = 3014-914 Most representative HarvEST:Barley Assembly #32 Unigene = 3014 Most representative HarvEST:Barley Assembly #35 Unigene = 15621 HarvEST Unigene 35 Probe Set = Contig4324_at; Contig4324_s_at Unigene 35 Rice Locus = LOC_Os04g41680 Description for best rice BLAST hit to Unigene 35 member = endochitinase A precursor, putative, expressed; E value = 1E-108 Original SNP name = SCRI_olad_221_01 HarvEST Unigene 35 Probe Set = Contig4324_at, Contig4324_s_at Description for best rice BLAST hit to Unigene 35 member = protein endochitinase A precursor, putative, expressed; E value = 1E-108 BLAST hit in the rice genome = endochitinase A precursor, putative, expressed
Probe for Locus	HAR35_15621
Locus	POPA1_0407 POPA3_1020
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare