Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0339

[Submit comment/correction]

Locus	POPA1_0339
Type	SNP
Chromosome	1H
Chromosome Arm	1HL
Map	Barley-Core-2014_1H 125.66 Hordeum-OPA-2009-1H 121.77 Hordeum-OPA123-2008-1H 121.77 Hordeum-OPAConsensus-2011-1H 123.1 Hordeum-OWB-OPA2008-1H 135.375
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_1406
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0339 Most representative HarvEST:Barley Assembly #32 Unigene = 2643 Most representative HarvEST:Barley Assembly #35 Unigene = 1406 HarvEST Unigene 35 Probe Set = Contig3794_at Unigene 35 Rice Locus = LOC_Os01g48280 Description for best rice BLAST hit to Unigene 35 member = ubiquitin-conjugating enzyme E2 N, putative, expressed; E value = 3E-83 Original SNP name = 2643-761 Description for best rice BLAST hit to Unigene 35 member = protein ubiquitin-conjugating enzyme E2 N, putative, expressed; E value = 3E-83 BLAST hit in the rice genome = ubiquitin-conjugating enzyme E2 N, putative, expressed
Probe for Locus	HAR35_1406
Locus	POPA1_0339
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare