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GrainGenes Marker Report: POPA1_0315

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Locus	POPA1_0315
Type	SNP
Synonym	Synonym 11_10315
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 141.28 Hordeum-OPA123-2008-2H 141.28 Hordeum-OPAConsensus-2011-2H 158.18 Hordeum-OWB-OPA2008-2H 172.555
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_1190
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0315 Marker name in barley OPA1 = 11_10315 Original SNP name = 252-556 Most representative HarvEST:Barley Assembly #32 Unigene = 252 Most representative HarvEST:Barley Assembly #35 Unigene = 1190 HarvEST Unigene 35 Probe Set = Contig208_s_at; Contig374_at; HT12H02r_at; S0000800179B07F1_s_at Unigene 35 Rice Locus = LOC_Os05g25850 Description for best rice BLAST hit to Unigene 35 member = superoxide dismutase, mitochondrial precursor, putative, expressed; E value = 1E-113 HarvEST Unigene 35 Probe Set = Contig208_s_at, Contig374_at, HT12H02r_at, S0000800179B07F1_s_at Description for best rice BLAST hit to Unigene 35 member = protein superoxide dismutase, mitochondrial precursor, putative, expressed; E value = 1E-113 BLAST hit in the rice genome = superoxide dismutase, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_1190
Locus	POPA1_0315
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare