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GrainGenes Marker Report: POPA1_0237

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Locus	POPA1_0237
Type	SNP
Synonym	Synonym CDO1049
Chromosome	5H
Chromosome Arm	5HL
Map	Barley-Core-2014_5H 44.99 Hordeum-OPA-2009-5H 59.4 Hordeum-OPA123-2008-5H 59.4 Hordeum-OPAConsensus-2011-5H 50.53 Hordeum-OWB-OPA2008-5H 66.008
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_1056
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0237 Most representative HarvEST:Barley Assembly #32 Unigene = 2146 Most representative HarvEST:Barley Assembly #35 Unigene = 1056 HarvEST Unigene 35 Probe Set = Contig3142_at; Contig3142_s_at; Contig3143_at Unigene 35 Rice Locus = LOC_Os09g02700 Description for best rice BLAST hit to Unigene 35 member = polyadenylate-binding protein 2, putative, expressed; E value = 0 Original SNP name = 2146-2057 HarvEST Unigene 35 Probe Set = Contig3142_at, Contig3142_s_at, Contig3143_at Description for best rice BLAST hit to Unigene 35 member = protein polyadenylate-binding protein 2, putative, expressed; E value = 0 BLAST hit in the rice genome = polyadenylate-binding protein 2, putative, expressed
Probe for Locus	HAR35_1056
Locus	POPA2_0306 POPA1_0237
Synonym	Synonym CDO1049
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare