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GrainGenes Marker Report: POPA1_0217

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Locus	POPA1_0217
Type	SNP
Synonym	Other name 11_10217 BOPA1_11_10217 BOPA1_203-1128 Synonym 11_10217
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 139.9 Hordeum-OPA-2009-5H 153.51 Hordeum-OPA123-2008-5H 153.51 Hordeum-OPAConsensus-2011-5H 149.94
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16166 i_11_10217
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0217 Marker name in barley OPA1 = 11_10217 Original SNP name = 203-1128 Most representative HarvEST:Barley Assembly #32 Unigene = 203 Most representative HarvEST:Barley Assembly #35 Unigene = 16166 HarvEST Unigene 35 Probe Set = Contig294_s_at; Contig408_at Unigene 35 Rice Locus = LOC_Os10g41960 Description for best rice BLAST hit to Unigene 35 member = eukaryotic translation initiation factor 3 subunit 9, putative, expressed; E value = 0 HarvEST Unigene 35 Probe Set = Contig294_s_at, Contig408_at Description for best rice BLAST hit to Unigene 35 member = protein eukaryotic translation initiation factor 3 subunit 9, putative, expressed; E value = 0 BLAST hit in the rice genome = eukaryotic translation initiation factor 3 subunit 9, putative, expressed
Probe for Locus	HAR35_16166
Locus	POPA1_0217 POPA3_0830
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare