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GrainGenes Marker Report: POPA1_0200

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Locus	POPA1_0200
Type	SNP
Chromosome	3H
Chromosome Arm	3HL
Map	Barley-Core-2014_3H 66.38 Hordeum-OPA-2009-3H 70.71 Hordeum-OPA123-2008-3H 70.71 Hordeum-OPAConsensus-2011-3H 83.58 Hordeum-OWB-OPA2008-3H 76.142
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_962
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0200 Most representative HarvEST:Barley Assembly #32 Unigene = 1961 Most representative HarvEST:Barley Assembly #35 Unigene = 962 HarvEST Unigene 35 Probe Set = HVSMEi0006K11r2_s_at Unigene 35 Rice Locus = LOC_Os01g54030 Description for best rice BLAST hit to Unigene 35 member = NADP-dependent malic enzyme, putative, expressed; E value = 0 Original SNP name = 1961-895 Description for best rice BLAST hit to Unigene 35 member = protein NADP-dependent malic enzyme, putative, expressed; E value = 0 BLAST hit in the rice genome = NADP-dependent malic enzyme, putative, expressed
Probe for Locus	HAR35_962
Locus	POPA2_0273 POPA1_0200
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare