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GrainGenes Marker Report: POPA1_0158

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Locus	POPA1_0158
Type	SNP
Synonym	Other name 11_10158 BOPA1_11_10158 BOPA1_1746-1527 Synonym 11_10158
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 59.89 Hordeum-OPA123-2008-3H 59.89 Hordeum-OPAConsensus-2011-3H 73.3
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15060 i_11_10158
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0158 Marker name in barley OPA1 = 11_10158 Original SNP name = 1746-1527 Most representative HarvEST:Barley Assembly #32 Unigene = 1746 Most representative HarvEST:Barley Assembly #35 Unigene = 15060 HarvEST Unigene 35 Probe Set = Contig2595_at Unigene 35 Rice Locus = LOC_Os09g17840 Description for best rice BLAST hit to Unigene 35 member = protein transport protein Sec61 alpha subunit isoform 2, putative, expressed; E value = 0 Description for best rice BLAST hit to Unigene 35 member = protein protein transport protein Sec61 alpha subunit isoform 2, putative, expressed; E value = 0 BLAST hit in the rice genome = protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
Probe for Locus	HAR35_15060
Locus	POPA1_0158 POPA3_0829
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare