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GrainGenes Marker Report: POPA1_0151

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Locus	POPA1_0151
Type	SNP
Synonym	Other name 12_10151 BOPA2_12_10151 Synonym 12_10151
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_15015 i_12_10151
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0151 Marker name in barley OPA1 = 12_10151 Original SNP name = 1730-1717 Most representative HarvEST:Barley Assembly #32 Unigene = 1730 Most representative HarvEST:Barley Assembly #35 Unigene = 15015 HarvEST Unigene 35 Probe Set = Contig2555_at; Contig2556_s_at; HVSMEn0023O21f_s_at Unigene 35 Rice Locus = LOC_Os04g57440 Description for best rice BLAST hit to Unigene 35 member = cysteine protease 1 precursor, putative, expressed; E value = 1E-169 BLAST hit in the rice genome = cysteine protease 1 precursor, putative, expressed
Probe for Locus	HAR35_15015
Locus	POPA1_0151
Synonym	Synonym BCD266
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare