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GrainGenes Marker Report: POPA1_0150

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Locus	POPA1_0150
Type	SNP
Synonym	Other name 11_10150 BOPA1_11_10150 BOPA1_1711-542 Synonym 11_10150
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_15123 i_11_10150
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0150 Marker name in barley OPA1 = 11_10150 Original SNP name = 1711-542 Most representative HarvEST:Barley Assembly #32 Unigene = 1711 Most representative HarvEST:Barley Assembly #35 Unigene = 15123 HarvEST Unigene 35 Probe Set = Contig2542_at; EBro08_SQ004_J12_s_at Unigene 35 Rice Locus = LOC_Os03g03130 Description for best rice BLAST hit to Unigene 35 member = ubiquitin-conjugating enzyme E2 I, putative, expressed; E value = 2E-87 BLAST hit in the rice genome = ubiquitin-conjugating enzyme E2 I, putative, expressed
Probe for Locus	HAR35_15123
Locus	POPA1_0150 POPA2_0237
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare