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GrainGenes Marker Report: POPA1_0139

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Locus
POPA1_0139
Type
SNP
Synonym
Other name11_10139
BOPA1_11_10139
BOPA1_1649-441
Synonym11_10139
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H97.39
Hordeum-OPA123-2008-6H97.39
Hordeum-OPAConsensus-2011-6H111.08
Hordeum-OWB-OPA2008-6H119.497
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_15039
i_11_10139
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 1_0139
Marker name in barley OPA1 = 11_10139
Original SNP name = 1649-441
Most representative HarvEST:Barley Assembly #32 Unigene = 1649
Most representative HarvEST:Barley Assembly #35 Unigene = 15039
HarvEST Unigene 35 Probe Set = Contig2450_at; Contig2452_s_at; EBma03_SQ002_K01_s_at
Unigene 35 Rice Locus = LOC_Os02g54470
Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L33-B, putative, expressed; E value = 6E-53
Original SNP name = UCI_Dhn5_1042
HarvEST Unigene 35 Probe Set = Contig2450_at, Contig2452_s_at, EBma03_SQ002_K01_s_at
Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L33-B, putative, expressed; E value = 6E-53
BLAST hit in the rice genome = 60S ribosomal protein L33-B, putative, expressed



Probe for Locus
HAR35_15039
Locus
POPA1_0139
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare