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GrainGenes Marker Report: POPA1_0136

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Locus
POPA1_0136
Type
SNP
Synonym
Other name11_10136
BOPA1_11_10136
BOPA1_1628-410
Synonym11_10136
Chromosome
6H
Chromosome Arm
6HS
Map
Barley, 2012 9KSNP 6H24.5
Hordeum-OPA-2009-6H24.36
Hordeum-OPA123-2008-6H24.36
Hordeum-OPAConsensus-2011-6H27.33
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15050
i_11_10136
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0136
Marker name in barley OPA1 = 11_10136
Original SNP name = 1628-410
Most representative HarvEST:Barley Assembly #32 Unigene = 1628
Most representative HarvEST:Barley Assembly #35 Unigene = 15050
HarvEST Unigene 35 Probe Set = Contig2369_s_at
Unigene 35 Rice Locus = LOC_Os06g02510
Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L13-2, putative, expressed; E value = 1E-102
Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L13-2, putative, expressed; E value = 1E-102
BLAST hit in the rice genome = 60S ribosomal protein L13-2, putative, expressed


Probe for Locus
HAR35_15050
Locus
POPA1_0136
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare