Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0130

[Submit comment/correction]

Locus	POPA1_0130
Type	SNP
Synonym	Other name 11_10130 BOPA1_11_10130 BOPA1_1590-544 Synonym 11_10130
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 131.4 Hordeum-OPA-2009-7H 147.48 Hordeum-OPA123-2008-7H 147.48 Hordeum-OPAConsensus-2011-7H 149.31 Hordeum-OWB-OPA2008-7H 168.258
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14961 i_11_10130
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0130 Marker name in barley OPA1 = 11_10130 Original SNP name = 1590-544 Most representative HarvEST:Barley Assembly #32 Unigene = 1590 Most representative HarvEST:Barley Assembly #35 Unigene = 14961 HarvEST Unigene 35 Probe Set = Contig2340_at; Contig2341_x_at; EBpi01_SQ001_K06_s_at Unigene 35 Rice Locus = LOC_Os02g18380 Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L27, putative, expressed; E value = 3E-67 HarvEST Unigene 35 Probe Set = Contig2340_at, Contig2341_x_at, EBpi01_SQ001_K06_s_at Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L27, putative, expressed; E value = 3E-67 BLAST hit in the rice genome = 60S ribosomal protein L27, putative, expressed
Probe for Locus	HAR35_14961
Locus	POPA1_0130 POPA2_0207
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare