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GrainGenes Marker Report: POPA1_0124

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Locus
POPA1_0124
Type
SNP
Synonym
Other name11_10124
BOPA1_11_10124
BOPA1_1565-514
Synonym11_10124
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H65.03
Hordeum-OPA123-2008-6H65.03
Hordeum-OPAConsensus-2011-6H74.65
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_14580
i_11_10124
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0124
Marker name in barley OPA1 = 11_10124
Original SNP name = 1565-514
Most representative HarvEST:Barley Assembly #32 Unigene = 1565
Most representative HarvEST:Barley Assembly #35 Unigene = 14580
HarvEST Unigene 35 Probe Set = Contig2290_s_at; Contig2293_at
Unigene 35 Rice Locus = LOC_Os06g21480
Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L31, putative, expressed; E value = 5E-59
HarvEST Unigene 35 Probe Set = Contig2290_s_at, Contig2293_at
Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L31, putative, expressed; E value = 5E-59
BLAST hit in the rice genome = 60S ribosomal protein L31, putative, expressed


Probe for Locus
HAR35_14580
Locus
POPA1_0124
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare