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GrainGenes Marker Report: POPA1_0120

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Locus	POPA1_0120
Type	SNP
Synonym	Other name 11_10120 BOPA1_11_10120 BOPA1_1553-753 Synonym 11_10120
Chromosome	6H
Chromosome Arm	6HS
Map	Hordeum-OPA-2009-6H 3.11 Hordeum-OPA123-2008-6H 3.11 Hordeum-OPAConsensus-2011-6H 6.54
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15005 i_11_10120
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0120 Marker name in barley OPA1 = 11_10120 Original SNP name = 1553-753 Most representative HarvEST:Barley Assembly #32 Unigene = 1553 Most representative HarvEST:Barley Assembly #35 Unigene = 15005 HarvEST Unigene 35 Probe Set = Contig2278_at Unigene 35 Rice Locus = LOC_Os02g01340 Description for best rice BLAST hit to Unigene 35 member = ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed; E value = 1E-169 Description for best rice BLAST hit to Unigene 35 member = protein ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed; E value = 1E-169 BLAST hit in the rice genome = ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_15005
Locus	POPA1_0120
Synonym	Synonym PSR119 psr119
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare