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GrainGenes Marker Report: POPA1_0114

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Locus	POPA1_0114
Type	SNP
Synonym	Other name 12_10114 BOPA2_12_10114 Synonym 12_10114
Chromosome	3H
Chromosome Arm	3HS
Map	Barley, 2012 9KSNP 3H 39.4 Hordeum-OPA-2009-3H 42.06 Hordeum-OPA123-2008-3H 42.06 Hordeum-OPAConsensus-2011-3H 42.31
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_6413 i_12_10114
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0114 Marker name in barley OPA1 = 12_10114 Original SNP name = 15141-288 Most representative HarvEST:Barley Assembly #32 Unigene = 15141 Most representative HarvEST:Barley Assembly #35 Unigene = 6413 HarvEST Unigene 35 Probe Set = Contig17158_at; Contig17158_s_at Unigene 35 Rice Locus = LOC_Os07g17130 Description for best rice BLAST hit to Unigene 35 member = senescence-associated-like protein, putative, expressed; E value = 5E-94 Marker name in barley OPA2 = 12_10114 HarvEST Unigene 35 Probe Set = Contig17158_at, Contig17158_s_at Description for best rice BLAST hit to Unigene 35 member = protein senescence-associated-like protein, putative, expressed; E value = 5E-94 BLAST hit in the rice genome = senescence-associated-like protein, putative, expressed
Probe for Locus	HAR35_6413
Locus	POPA2_0193 POPA1_0114
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare