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GrainGenes Marker Report: POPA1_0112

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Locus	POPA1_0112
Type	SNP
Synonym	Other name 11_10112 BOPA1_11_10112 BOPA1_1499-290 Synonym 11_10112
Chromosome	3H
Chromosome Arm	3HS
Map	Barley, 2012 9KSNP 3H 8.5 Hordeum-OPA-2009-3H 10.8 Hordeum-OPA123-2008-3H 10.8 Hordeum-OPAConsensus-2011-3H 14
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_482 i_11_10112
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0112 Marker name in barley OPA1 = 11_10112 Original SNP name = 1499-290 Most representative HarvEST:Barley Assembly #32 Unigene = 1499 Most representative HarvEST:Barley Assembly #35 Unigene = 482 HarvEST Unigene 35 Probe Set = Contig2088_s_at Unigene 35 Rice Locus = LOC_Os01g03340 Description for best rice BLAST hit to Unigene 35 member = Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed; E value = 3E-30 Original SNP name = SCRI_abc04112_02_2 Description for best rice BLAST hit to Unigene 35 member = protein Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed; E value = 3E-30 BLAST hit in the rice genome = Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
Probe for Locus	HAR35_482
Locus	POPA1_0112
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare