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GrainGenes Marker Report: POPA1_0107

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Locus
POPA1_0107
Type
SNP
Synonym
Other name11_10107
BOPA1_11_10107
BOPA1_1473-1115
Synonym11_10107
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H119.02
Hordeum-OPA123-2008-6H119.02
Hordeum-OPAConsensus-2011-6H127.76
Hordeum-OWB-OPA2008-6H149.926
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_541
i_11_10107
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0107
Marker name in barley OPA1 = 11_10107
Original SNP name = 1473-1115
Most representative HarvEST:Barley Assembly #32 Unigene = 1473
Most representative HarvEST:Barley Assembly #35 Unigene = 541
HarvEST Unigene 35 Probe Set = Contig2133_s_at; Contig2133_x_at; Contig2135_s_at
Unigene 35 Rice Locus = LOC_Os12g29220
Description for best rice BLAST hit to Unigene 35 member = MTN3, putative, expressed; E value = 1E-112
Original SNP name = U35_3529_1428
HarvEST Unigene 35 Probe Set = Contig2133_s_at, Contig2133_x_at, Contig2135_s_at
Description for best rice BLAST hit to Unigene 35 member = protein MTN3, putative, expressed; E value = 1E-112
BLAST hit in the rice genome = MTN3, putative, expressed



Probe for Locus
HAR35_541
Locus
POPA1_0107
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare