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GrainGenes Marker Report: POPA1_0095

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Locus
POPA1_0095
Type
SNP
Synonym
Other name11_10095
BOPA1_11_10095
BOPA1_1394-1222
Synonym11_10095
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H126.8
Hordeum-OPA-2009-5H137.16
Hordeum-OPA123-2008-5H137.16
Hordeum-OPAConsensus-2011-5H132.32
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_397
i_11_10095
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0095
Marker name in barley OPA1 = 11_10095
Original SNP name = 1394-1222
Most representative HarvEST:Barley Assembly #32 Unigene = 1394
Most representative HarvEST:Barley Assembly #35 Unigene = 397
HarvEST Unigene 35 Probe Set = Contig2143_s_at
Unigene 35 Rice Locus = LOC_Os12g25690
Description for best rice BLAST hit to Unigene 35 member = UDP-glucose 6-dehydrogenase, putative, expressed; E value = 0
Description for best rice BLAST hit to Unigene 35 member = protein UDP-glucose 6-dehydrogenase, putative, expressed; E value = 0
BLAST hit in the rice genome = UDP-glucose 6-dehydrogenase, putative, expressed


Probe for Locus
HAR35_397
Locus
POPA1_0095
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare