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GrainGenes Marker Report: POPA1_0092

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Locus
POPA1_0092
Type
SNP
Synonym
Other name11_10092
BOPA1_11_10092
BOPA1_1381-547
Synonym11_10092
Chromosome
2H
Chromosome Arm
2HL
Map
Barley, 2012 9KSNP 2H113.5
Hordeum-OPA-2009-2H121.5
Hordeum-OPA123-2008-2H121.5
Hordeum-OPAConsensus-2011-2H137.03
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_614
i_11_10092
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0092
Marker name in barley OPA1 = 11_10092
Original SNP name = 1381-547
Most representative HarvEST:Barley Assembly #32 Unigene = 1381
Most representative HarvEST:Barley Assembly #35 Unigene = 614
HarvEST Unigene 35 Probe Set = Contig2043_s_at
Unigene 35 Rice Locus = LOC_Os12g02300
Description for best rice BLAST hit to Unigene 35 member = nonspecific lipid-transfer protein 4 precursor, putative, expressed; E value = 2E-42
Description for best rice BLAST hit to Unigene 35 member = protein nonspecific lipid-transfer protein 4 precursor, putative, expressed; E value = 2E-42
BLAST hit in the rice genome = nonspecific lipid-transfer protein 4 precursor, putative, expressed



Probe for Locus
HAR35_614
Locus
POPA1_0092
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare