Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0084

[Submit comment/correction]

Locus	POPA1_0084
Type	SNP
Synonym	Other name 11_10084 BOPA1_11_10084 BOPA1_1341-841 Synonym 11_10084
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 45.55 Hordeum-OPA123-2008-2H 45.55 Hordeum-OWB-OPA2008-2H 56.301
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14923 i_11_10084
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0084 Marker name in barley OPA1 = 11_10084 Original SNP name = 1341-841 Most representative HarvEST:Barley Assembly #32 Unigene = 1341 Most representative HarvEST:Barley Assembly #35 Unigene = 14923 HarvEST Unigene 35 Probe Set = HV_CEa0002E17r2_s_at Unigene 35 Rice Locus = LOC_Os03g22810 Description for best rice BLAST hit to Unigene 35 member = superoxide dismutase 1, putative, expressed; E value = 1E-76 Original SNP name = U32_1342_283 Description for best rice BLAST hit to Unigene 35 member = protein superoxide dismutase 1, putative, expressed; E value = 1E-76 BLAST hit in the rice genome = superoxide dismutase 1, putative, expressed
Probe for Locus	HAR35_14923
Locus	POPA1_0084 POPA2_0147
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare