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GrainGenes Marker Report: POPA1_0083

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Locus	POPA1_0083
Type	SNP
Synonym	Other name 11_10083 BOPA1_11_10083 BOPA1_1337-638 Synonym 11_10083
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 77.45 Hordeum-OPA123-2008-7H 77.45 Hordeum-OPAConsensus-2011-7H 79.08 Hordeum-OWB-OPA2008-7H 79.577
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14826 i_11_10083
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0083 Marker name in barley OPA1 = 11_10083 Original SNP name = 1337-638 Most representative HarvEST:Barley Assembly #32 Unigene = 1337 Most representative HarvEST:Barley Assembly #35 Unigene = 14826 HarvEST Unigene 35 Probe Set = Contig2000_at; HS18F06u_s_at Unigene 35 Rice Locus = LOC_Os09g32976 Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L7a, putative, expressed; E value = 1E-142 HarvEST Unigene 35 Probe Set = Contig2000_at, HS18F06u_s_at Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L7a, putative, expressed; E value = 1E-142 BLAST hit in the rice genome = 60S ribosomal protein L7a, putative, expressed
Probe for Locus	HAR35_14826
Locus	POPA1_0083
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare