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GrainGenes Marker Report: POPA1_0078

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Locus	POPA1_0078
Type	SNP
Synonym	Other name 11_10078 BOPA1_11_10078 BOPA1_13008-352 Synonym 11_10078
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 136.62 Hordeum-OPA123-2008-7H 136.62 Hordeum-OPAConsensus-2011-7H 137.31
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_7579 i_11_10078
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0078 Marker name in barley OPA1 = 11_10078 Original SNP name = 13008-352 Most representative HarvEST:Barley Assembly #32 Unigene = 13008 Most representative HarvEST:Barley Assembly #35 Unigene = 7579 HarvEST Unigene 35 Probe Set = Contig15773_at Unigene 35 Rice Locus = LOC_Os06g44190 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 2E-19 Original SNP name = OSU_Contig350_x_at_61 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 2E-19 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_7579
Locus	POPA1_0078
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare