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GrainGenes Marker Report: POPA1_0075

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Locus	POPA1_0075
Type	SNP
Synonym	Other name 11_10075 BOPA1_11_10075 BOPA1_1294-473 Synonym 11_10075
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 48.4 Hordeum-OPA-2009-1H 55.49 Hordeum-OPA123-2008-1H 55.49 Hordeum-OPAConsensus-2011-1H 45.2
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16457 i_11_10075
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0075 Marker name in barley OPA1 = 11_10075 Original SNP name = 1294-473 Most representative HarvEST:Barley Assembly #32 Unigene = 1294 Most representative HarvEST:Barley Assembly #35 Unigene = 16457 HarvEST Unigene 35 Probe Set = Contig1920_at; HVSMEg0010D04f2_at Unigene 35 Rice Locus = LOC_Os10g37420 Description for best rice BLAST hit to Unigene 35 member = cytochrome b5, putative, expressed; E value = 3E-58 Original SNP name = U32_8403_383 HarvEST Unigene 35 Probe Set = Contig1920_at, HVSMEg0010D04f2_at Description for best rice BLAST hit to Unigene 35 member = protein cytochrome b5, putative, expressed; E value = 3E-58 BLAST hit in the rice genome = cytochrome b5, putative, expressed
Probe for Locus	HAR35_16457
Locus	POPA1_0075
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare