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GrainGenes Marker Report: POPA1_0072

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Locus	POPA1_0072
Type	SNP
Synonym	Other name 11_10072 BOPA1_11_10072 BOPA1_1283-332 Synonym 11_10072
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 141.6 Hordeum-OPA-2009-2H 151.37 Hordeum-OPA123-2008-2H 151.37 Hordeum-OPAConsensus-2011-2H 165.28
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14693 i_11_10072
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0072 Marker name in barley OPA1 = 11_10072 Original SNP name = 1283-332 Most representative HarvEST:Barley Assembly #32 Unigene = 1283 Most representative HarvEST:Barley Assembly #35 Unigene = 14693 HarvEST Unigene 35 Probe Set = HA05b17r_at; rbags16g09_s_at Unigene 35 Rice Locus = LOC_Os07g14270 Description for best rice BLAST hit to Unigene 35 member = calreticulin precursor, putative, expressed; E value = 0 Original SNP name = U35_851_373 HarvEST Unigene 35 Probe Set = HA05b17r_at, rbags16g09_s_at Description for best rice BLAST hit to Unigene 35 member = protein calreticulin precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = calreticulin precursor, putative, expressed
Probe for Locus	HAR35_14693
Locus	POPA1_0072
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare