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GrainGenes Marker Report: POPA1_0070

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Locus	POPA1_0070
Type	SNP
Synonym	Other name 11_10070 BOPA1_11_10070 BOPA1_1275-734 Synonym 11_10070
Chromosome	2H
Chromosome Arm	2HS
Map	Barley, 2012 9KSNP 2H 55.6 Hordeum-OPA-2009-2H 58.9 Hordeum-OPA123-2008-2H 58.9 Hordeum-OPAConsensus-2011-2H 66.2
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14281 i_11_10070
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0070 Marker name in barley OPA1 = 11_10070 Original SNP name = 1275-734 Most representative HarvEST:Barley Assembly #32 Unigene = 1275 Most representative HarvEST:Barley Assembly #35 Unigene = 14281 HarvEST Unigene 35 Probe Set = Contig1888_at; HA10A05u_s_at Unigene 35 Rice Locus = LOC_Os07g37240 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-149 HarvEST Unigene 35 Probe Set = Contig1888_at, HA10A05u_s_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-149 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_14281
Locus	POPA1_0070
Synonym	Synonym PSR107 psr107
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare