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GrainGenes Marker Report: POPA1_0064

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Locus	POPA1_0064
Type	SNP
Synonym	Other name 11_10064 BOPA1_11_10064 BOPA1_1240-844 Synonym 11_10064
Chromosome	6H
Chromosome Arm	6HS
Map	Hordeum-OPA-2009-6H 21.69 Hordeum-OPA123-2008-6H 21.69 Hordeum-OPAConsensus-2011-6H 23.62 Hordeum-OWB-OPA2008-6H 30.074
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14773 i_11_10064
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0064 Marker name in barley OPA1 = 11_10064 Original SNP name = 1240-844 Most representative HarvEST:Barley Assembly #32 Unigene = 1240 Most representative HarvEST:Barley Assembly #35 Unigene = 14773 HarvEST Unigene 35 Probe Set = HT06F11u_s_at Unigene 35 Rice Locus = LOC_Os02g02400 Description for best rice BLAST hit to Unigene 35 member = catalase isozyme A, putative, expressed; E value = 0 Description for best rice BLAST hit to Unigene 35 member = protein catalase isozyme A, putative, expressed; E value = 0 BLAST hit in the rice genome = catalase isozyme A, putative, expressed
Probe for Locus	HAR35_14773
Locus	POPA1_0064 POPA3_1103
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare