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GrainGenes Marker Report: POPA1_0058

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Locus	POPA1_0058
Type	SNP
Synonym	Other name 11_10058 BOPA1_11_10058 BOPA1_1215-862 Synonym 11_10058
Chromosome	5H
Chromosome Arm	5HO
Map	Barley, 2012 9KSNP 5H 44.2 Hordeum-OPA-2009-5H 51.3 Hordeum-OPA123-2008-5H 51.3 Hordeum-OPAConsensus-2011-5H 42.41
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14662 i_11_10058
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0058 Marker name in barley OPA1 = 11_10058 Original SNP name = 1215-862 Most representative HarvEST:Barley Assembly #32 Unigene = 1215 Most representative HarvEST:Barley Assembly #35 Unigene = 14662 HarvEST Unigene 35 Probe Set = Contig1810_at; rbasd18a22_s_at Unigene 35 Rice Locus = LOC_Os11g38959 Description for best rice BLAST hit to Unigene 35 member = 40S ribosomal protein S9, putative, expressed; E value = 1E-102 Original SNP name = U32_7525_608 HarvEST Unigene 35 Probe Set = Contig1810_at, rbasd18a22_s_at Description for best rice BLAST hit to Unigene 35 member = protein 40S ribosomal protein S9, putative, expressed; E value = 1E-102 BLAST hit in the rice genome = 40S ribosomal protein S9, putative, expressed
Probe for Locus	HAR35_14662
Locus	POPA1_0058
Synonym	Synonym BCD1707
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare