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GrainGenes Marker Report: POPA1_0056

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Locus	POPA1_0056
Type	SNP
Synonym	Other name 11_10056 BOPA1_11_10056 BOPA1_1213-1959 Synonym 11_10056
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 37.6 Hordeum-OPA-2009-7H 40.18 Hordeum-OPA123-2008-7H 40.18 Hordeum-OPAConsensus-2011-7H 33.49
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14589 i_11_10056
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0056 Marker name in barley OPA1 = 11_10056 Original SNP name = 1213-1959 Most representative HarvEST:Barley Assembly #32 Unigene = 1213 Most representative HarvEST:Barley Assembly #35 Unigene = 14589 HarvEST Unigene 35 Probe Set = Contig1808_at Unigene 35 Rice Locus = LOC_Os06g06560 Description for best rice BLAST hit to Unigene 35 member = soluble starch synthase 1, chloroplast precursor, putative, expressed; E value = 0 Description for best rice BLAST hit to Unigene 35 member = protein soluble starch synthase 1, chloroplast precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = soluble starch synthase 1, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_14589
Locus	POPA1_0056
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare