Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0044

[Submit comment/correction]

Locus	POPA1_0044
Type	SNP
Synonym	Other name 11_10044 BOPA1_11609-524 BOPA1_11_10044 Synonym 11_10044
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPAConsensus-2011-3H 134.71
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_2661 i_11_10044
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0044 Marker name in barley OPA1 = 11_10044 Original SNP name = 11609-524 Most representative HarvEST:Barley Assembly #32 Unigene = 11609 Most representative HarvEST:Barley Assembly #35 Unigene = 2661 HarvEST Unigene 35 Probe Set = Contig15072_at Unigene 35 Rice Locus = LOC_Os01g66320 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 6E-64 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_2661
Locus	POPA1_0044