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GrainGenes Marker Report: POPA1_0041

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Locus	POPA1_0041
Type	SNP
Synonym	Other name 11_10041 BOPA1_11454-414 BOPA1_11_10041 Synonym 11_10041
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 135.56 Hordeum-OPA123-2008-1H 135.56 Hordeum-OPAConsensus-2011-1H 138.86 Hordeum-OWB-OPA2008-1H 153.013
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_4779 i_11_10041
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0041 Marker name in barley OPA1 = 11_10041 Original SNP name = 11454-414 Most representative HarvEST:Barley Assembly #32 Unigene = 11454 Most representative HarvEST:Barley Assembly #35 Unigene = 4779 HarvEST Unigene 35 Probe Set = Contig14590_at; HA13E08r_s_at Unigene 35 Rice Locus = LOC_Os01g42960 Description for best rice BLAST hit to Unigene 35 member = electron transporter, putative, expressed; E value = 0.0000003 HarvEST Unigene 35 Probe Set = Contig14590_at, HA13E08r_s_at Description for best rice BLAST hit to Unigene 35 member = protein electron transporter, putative, expressed; E value = 0.0000003 BLAST hit in the rice genome = electron transporter, putative, expressed
Probe for Locus	HAR35_4779
Locus	POPA1_0041
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare