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GrainGenes Marker Report: POPA1_0040

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Locus	POPA1_0040
Type	SNP
Synonym	Other name 11_10040 BOPA1_1140-1508 BOPA1_11_10040 Synonym 11_10040
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 66.1 Hordeum-OPA-2009-6H 65.03 Hordeum-OPA123-2008-6H 65.03 Hordeum-OPAConsensus-2011-6H 74.65
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14528 i_11_10040
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0040 Marker name in barley OPA1 = 11_10040 Original SNP name = 1140-1508 Most representative HarvEST:Barley Assembly #32 Unigene = 1140 Most representative HarvEST:Barley Assembly #35 Unigene = 14528 HarvEST Unigene 35 Probe Set = Contig1698_at Unigene 35 Rice Locus = LOC_Os02g48560 Description for best rice BLAST hit to Unigene 35 member = omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed; E value = 0 Description for best rice BLAST hit to Unigene 35 member = protein omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed; E value = 0 BLAST hit in the rice genome = omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
Probe for Locus	HAR35_14528
Locus	POPA1_0040
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare