GrainGenes Marker Report: POPA1_0029
Locus
POPA1_0029
Type
SNP
Chromosome
1H
Map
Barley-Core-2014_1H 142.74 Hordeum-OPAConsensus-2011-1H 143.2
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_14389
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 7 ] Marker name in barley Pilot OPA1 = 1_0029 Most representative HarvEST:Barley Assembly #32 Unigene = 1078 Most representative HarvEST:Barley Assembly #35 Unigene = 14389 HarvEST Unigene 35 Probe Set = Contig1625_at; Contig1625_s_at; HS17I13u_s_at Unigene 35 Rice Locus = LOC_Os05g51830 Description for best rice BLAST hit to Unigene 35 member = histone deacetylase 2b, putative, expressed; E value = 1E-101 BLAST hit in the rice genome = histone deacetylase 2b, putative, expressed
Probe for Locus
HAR35_14389
Locus
POPA3_0934 POPA3_0935 POPA1_0029 POPA2_0046 POPA3_0936
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0029
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