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GrainGenes Marker Report: POPA1_0026

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Locus
POPA1_0026
Type
SNP
Synonym
Other name11_10026
BOPA1_1074-992
BOPA1_11_10026
Synonym11_10026
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H32.83
Hordeum-OPA123-2008-3H32.83
Hordeum-OPAConsensus-2011-3H34.15
Hordeum-OWB-OPA2008-3H35.124
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_14505
i_11_10026
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0026
Marker name in barley OPA1 = 11_10026
Original SNP name = 1074-992
Most representative HarvEST:Barley Assembly #32 Unigene = 1074
Most representative HarvEST:Barley Assembly #35 Unigene = 14505
HarvEST Unigene 35 Probe Set = Contig1626_s_at; Contig1630_at
Unigene 35 Rice Locus = LOC_Os01g05490
HarvEST Unigene 35 Probe Set = Contig1626_s_at, Contig1630_at
Description for best rice BLAST hit to Unigene 35 member = protein triosephosphate isomerase, cytosolic, putative, expressed; E value = 1E-122
BLAST hit in the rice genome = triosephosphate isomerase, cytosolic, putative, expressed


Probe for Locus
HAR35_14505
Locus
POPA1_0026
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare