Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0025

[Submit comment/correction]

Locus	POPA1_0025
Type	SNP
Synonym	Other name 11_10025 BOPA1_1073-916 BOPA1_11_10025 Synonym 11_10025
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 21.13 Hordeum-OPA123-2008-7H 21.13 Hordeum-OPAConsensus-2011-7H 14.39
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14496 i_11_10025
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0025 Marker name in barley OPA1 = 11_10025 Original SNP name = 1073-916 Most representative HarvEST:Barley Assembly #32 Unigene = 1073 Most representative HarvEST:Barley Assembly #35 Unigene = 14496 HarvEST Unigene 35 Probe Set = Contig1618_at Unigene 35 Rice Locus = LOC_Os06g04270 Description for best rice BLAST hit to Unigene 35 member = transketolase, chloroplast precursor, putative, expressed; E value = 0 Description for best rice BLAST hit to Unigene 35 member = protein transketolase, chloroplast precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = transketolase, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_14496
Locus	POPA1_0025 POPA2_0040
Synonym	Synonym BCD93 cMWG703
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare