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GrainGenes Marker Report: POPA1_0023

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Locus	POPA1_0023
Type	SNP
Synonym	Other name 11_10023 BOPA1_1066-2110 BOPA1_11_10023 Synonym 11_10023
Chromosome	6H
Chromosome Arm	6HS
Map	Hordeum-OPA-2009-6H 22.35 Hordeum-OPA123-2008-6H 22.35 Hordeum-OPAConsensus-2011-6H 24.91 Hordeum-OWB-OPA2008-6H 31.161
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14470 i_11_10023
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0023 Marker name in barley OPA1 = 11_10023 Original SNP name = 1066-2110 Most representative HarvEST:Barley Assembly #32 Unigene = 1066 Most representative HarvEST:Barley Assembly #35 Unigene = 14470 HarvEST Unigene 35 Probe Set = Contig1615_s_at; L32165_s_at Unigene 35 Rice Locus = LOC_Os02g02410 Description for best rice BLAST hit to Unigene 35 member = luminal-binding protein 3 precursor, putative, expressed; E value = 0 HarvEST Unigene 35 Probe Set = Contig1615_s_at, L32165_s_at Description for best rice BLAST hit to Unigene 35 member = protein luminal-binding protein 3 precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = luminal-binding protein 3 precursor, putative, expressed
Probe for Locus	HAR35_14470
Locus	POPA1_0023 POPA2_0035
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare