Query (optional)   in Class  

GrainGenes Marker Report: POPA1_0020

[Submit comment/correction]

Locus
POPA1_0020
Type
SNP
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Core-2014_5H180.54
Hordeum-OPA-2009-5H191.97
Hordeum-OPA123-2008-5H191.97
Hordeum-OPAConsensus-2011-5H187.2
Hordeum-OWB-OPA2008-5H237.994
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Barley, USDA Core, 2014 Consensus
Probe
HAR35_14472
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ]
Marker name in barley Pilot OPA1 = 1_0020
Most representative HarvEST:Barley Assembly #32 Unigene = 1056
Most representative HarvEST:Barley Assembly #35 Unigene = 14472
HarvEST Unigene 35 Probe Set = Contig1589_s_at; Contig1597_s_at; HZ65O04r_at
Unigene 35 Rice Locus = LOC_Os01g27360
Original SNP name = 1056-798
HarvEST Unigene 35 Probe Set = Contig1589_s_at, Contig1597_s_at, HZ65O04r_at
Description for best rice BLAST hit to Unigene 35 member = protein glutathione S-transferase GSTF1, putative, expressed; E value = 1E-106
BLAST hit in the rice genome = glutathione S-transferase GSTF1, putative, expressed



Probe for Locus
HAR35_14472
Locus
POPA1_0020
POPA2_0030
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare