GrainGenes Marker Report: POPA1_0018
Locus
POPA1_0018
Type
SNP
Chromosome
6H
Chromosome Arm
6HS
Map
Hordeum-OPA-2009-6H 0 Hordeum-OPA123-2008-6H 0
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_509
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0018 Most representative HarvEST:Barley Assembly #32 Unigene = 1052 Most representative HarvEST:Barley Assembly #35 Unigene = 509 HarvEST Unigene 35 Probe Set = Contig1580_x_at Unigene 35 Rice Locus = LOC_Os06g31800 Description for best rice BLAST hit to Unigene 35 member = thionin precursor, putative, expressed; E value = 1E-30 Original SNP name = 1052-644 Description for best rice BLAST hit to Unigene 35 member = protein thionin precursor, putative, expressed; E value = 1E-30 BLAST hit in the rice genome = thionin precursor, putative, expressed
Probe for Locus
HAR35_509
Locus
POPA1_0018 POPA2_0028
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0018
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