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GrainGenes Marker Report: POPA1_0010

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Locus	POPA1_0010
Type	SNP
Synonym	Other name 11_10010 BOPA1_10321-364 BOPA1_11_10010 Synonym 11_10010
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 66 Hordeum-OPA123-2008-4H 66 Hordeum-OPAConsensus-2011-4H 77.66
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_20495 i_11_10010
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0010 Marker name in barley OPA1 = 11_10010 Original SNP name = 10321-364 Most representative HarvEST:Barley Assembly #32 Unigene = 10321 Most representative HarvEST:Barley Assembly #35 Unigene = 20495 HarvEST Unigene 35 Probe Set = Contig12508_s_at; Contig12509_at Unigene 35 Rice Locus = LOC_Os03g12260 Description for best rice BLAST hit to Unigene 35 member = cytochrome P450 86A2, putative, expressed; E value = 1E-102 Original SNP name = U35_6233_449 HarvEST Unigene 35 Probe Set = Contig12508_s_at, Contig12509_at Description for best rice BLAST hit to Unigene 35 member = protein cytochrome P450 86A2, putative, expressed; E value = 1E-102 BLAST hit in the rice genome = cytochrome P450 86A2, putative, expressed
Probe for Locus	HAR35_20495
Locus	POPA1_0010
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare