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GrainGenes Marker Report: POPA1_0006

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Locus	POPA1_0006
Type	SNP
Synonym	Other name 11_10006 BOPA1_1016-376 BOPA1_11_10006 Synonym 11_10006
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 71 Hordeum-OPA-2009-1H 73.94 Hordeum-OPA123-2008-1H 73.94 Hordeum-OPAConsensus-2011-1H 76.92
	[ Show Nearby Loci ]
QTL with Locus Marker	MQTL_Du2024.yield-1H.5
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14336 i_11_10006
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0006 Marker name in barley OPA1 = 11_10006 Original SNP name = 1016-376 Most representative HarvEST:Barley Assembly #32 Unigene = 1016 Most representative HarvEST:Barley Assembly #35 Unigene = 14336 HarvEST Unigene 35 Probe Set = Contig1512_at Unigene 35 Rice Locus = LOC_Os01g18050 Description for best rice BLAST hit to Unigene 35 member = tubulin beta-1 chain, putative, expressed; E value = 0 Description for best rice BLAST hit to Unigene 35 member = protein tubulin beta-1 chain, putative, expressed; E value = 0 BLAST hit in the rice genome = tubulin beta-1 chain, putative, expressed
Probe for Locus	HAR35_14336
Locus	POPA1_0006
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare