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GrainGenes Marker Report: POPA1_0005

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Locus	POPA1_0005
Type	SNP
Synonym	Other name 11_10005 BOPA1_10126-999 BOPA1_11_10005 Synonym 11_10005
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 53.3 Hordeum-OPA-2009-3H 61.44 Hordeum-OPA123-2008-3H 61.44 Hordeum-OPAConsensus-2011-3H 71.26
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16766 i_11_10005
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0005 Marker name in barley OPA1 = 11_10005 Original SNP name = 10126-999 Most representative HarvEST:Barley Assembly #32 Unigene = 10126 Most representative HarvEST:Barley Assembly #35 Unigene = 16766 HarvEST Unigene 35 Probe Set = Contig12629_at; Contig12629_s_at Unigene 35 Rice Locus = LOC_Os01g49529 Description for best rice BLAST hit to Unigene 35 member = OsWAK10a - OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK), expressed; E value = 1E-150 HarvEST Unigene 35 Probe Set = Contig12629_at, Contig12629_s_at Description for best rice BLAST hit to Unigene 35 member = protein OsWAK10a - OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK), expressed; E value = 1E-150 BLAST hit in the rice genome = OsWAK10a - OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK), expressed
Probe for Locus	HAR35_16766
Locus	POPA1_0005
Synonym	Synonym ABG398
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare