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GrainGenes Marker Report: POPA1_0004

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Locus	POPA1_0004
Type	SNP
Chromosome	5H
Chromosome Arm	5HL
Map	Barley-Core-2014_5H 133.54 Hordeum-OPA-2009-5H 145.35 Hordeum-OPA123-2008-5H 145.35 Hordeum-OPAConsensus-2011-5H 140.14 Hordeum-OWB-OPA2008-5H 177.216
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_14331
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0004 Most representative HarvEST:Barley Assembly #32 Unigene = 1011 Most representative HarvEST:Barley Assembly #35 Unigene = 14331 HarvEST Unigene 35 Probe Set = Contig1506_s_at; Contig1516_s_at Unigene 35 Rice Locus = LOC_Os03g56810 Description for best rice BLAST hit to Unigene 35 member = tubulin beta-7 chain, putative, expressed; E value = 0 Original SNP name = 1011-1110 HarvEST Unigene 35 Probe Set = Contig1506_s_at, Contig1516_s_at Description for best rice BLAST hit to Unigene 35 member = protein tubulin beta-7 chain, putative, expressed; E value = 0 BLAST hit in the rice genome = tubulin beta-7 chain, putative, expressed
Probe for Locus	HAR35_14331
Locus	POPA2_0008 POPA1_0004
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare