Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: MWG882A

[Submit comment/correction]

Locus	MWG882A
Type	RFLP
Synonym	Synonym MWG882
Chromosome	2H
Map	Hordeum-Bins-2H 95 [ Show all 10 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 10 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, OWB Barley, OWB, 2004 Barley, OWB, 2005 Barley, OWB, OPA2008 Barley, OWB, SNP
Species	Hordeum vulgare
Probe	MWG882
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Kleinhofs, Andris
Remark	Number of populations contributing to the placement of MWG882A in the Barley, Consensus 2006 DArT maps = 1 This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Possible Orthologs	MWG882 MWG882a-2H MWG882B
Probe for Locus	MWG882
Locus	MWG882 MWG882A MWG882B MWG882a-2H
Synonym	Synonym HAR35_523
Type	Genomic STS
PCR primers	MWG882T3-3 AGATGAATCTGATGATGATGGAAGC MWG882T7-2 TCATGAGAGCCTACTTAATGTTGGG
STS primers	5' GGAAGCTGGCCAACTTGCAA 5' CTCCATGACTGACAGCAGCT
STS size	414
Amplification Conditions	STS annealing temperature 55-58 oC
Sequence	AJ234615 AJ234614 MWG882 MWG882-5 MWG882-3
Insert Enzyme	PstI
Source Species	Hordeum vulgare