Query (optional)   in Class  

GrainGenes Marker Report: MWG844b

[Submit comment/correction]

Locus
MWG844b
Type
RFLP
SNP
Synonym
SynonymMWG844
Chromosome
2H
3H
Map
[ Hide all but 1 of 11 ]
Barley-Consensus2-3H43.1
Hordeum-Bins-3H66
Hordeum-Consensus2005-SNP-2H145.64
Hordeum-Graner2-3H55.6
Hordeum-OPA-2009-2H249
Hordeum-PilotOPA1-2H155.5
Hordeum-QTLConsensus-Abiotic-2H145.64
Hordeum-QTLConsensus-Agronomic-2H145.64
Hordeum-StMo-SNP-2H145.7
Hv-Consensus2006-Marcel-3H47.29
Hv-Integrated2009-3H59.6
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 11 ]
Probe
MWG844
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Close, Timothy J.
Kleinhofs, Andris
Remark
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec; Igri x Franka
Possible Orthologs
MWG844
[ Show all 7 ]



Probe for Locus
MWG844
Locus
MWG844a
[ Show all 8 ]
Synonym
SynonymHAR35_26589
HAR35_42594
HAR35_9645
Type
Genomic
STS
STS primers
5' TCAGGAACCTGGCACCAACG
5' CATCAGCCCGCGATACATCC
STS size
374
Amplification Conditions
STS annealing temperature 58-60 oC
Sequence
AJ234585
MWG844-5
Polymorphism
MWG844 EcoRI
Insert Enzyme
PstI
Source Species
Hordeum vulgare