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GrainGenes Marker Report: MWG522

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Locus	MWG522
Type	RFLP
Synonym	Synonym MWG522
Chromosome	5H
Chromosome Arm	5HL
Map	Barley-Consensus-5H 36.7 [ Show all 17 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QHt.HaTR-5H.2
Map Data	[ Hide all but 1 of 19 ] Barley consensus Barley consensus 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, HxT Barley, HxT basemap Barley, Igri x Franka, SSR Barley, Integrated, Marcel 2009 Barley, IxF Barley, physical Barley, Steptoe x Morex, SNP Barley, SxM Barley, SxM, Feed QTLs Barley, VxHs
Species	Hordeum vulgare
Probe	MWG522
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	MWG522-5H Xmwg522 Xmwg522-5A mwg522 mwg522-5A
Probe	MWG522
Locus	MWG522 [ Show all 6 ]
Synonym	Synonym HAR35_29448
Type	Genomic STS
STS primers	5' CTCACCTGTCTGTATGCACGCATGC 5' CACAAGGATCAGCAACTGTGT
STS size	ca. 1170
Amplification Conditions	STS annealing temperature 60-62 oC
Sequence	AJ234483 AJ234482 MWG522 MWG522-5 MWG522-3
Insert Enzyme	PstI
Source Species	Hordeum vulgare