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GrainGenes Marker Report: Ltp1

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Gene	ltp1
Gene Product	non-specific lipid transport protein 1 non-specific lipid transport protein 1 precursor
Sequence	AM901399 AM901399_1.cds
Locus	Ltp1
Type	Gene RFLP
Synonym	Synonym Ltp1 (Hordeum)
Chromosome	5H
Chromosome Arm	5HS
Map	Barley-Consensus-5H -3.2 [ Show all 15 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 15 ] Barley consensus Barley consensus 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, OPA 2009, Consensus Barley, Pilot OPA1, Consensus Barley, Steptoe x Morex, SNP Barley, SxM Barley, SxM, Feed QTLs
Species	Hordeum vulgare
Probe	A1f
Associated Gene	Ltp1 (Hordeum)
Gene Class	Lipid transfer protein
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Close, Timothy J.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Probe for Locus	A1f
Locus	Ltp1 Ltp1-5H
Synonym	Other name Alf Ltp1 Synonym HAR35_37326 HAR35_42600
External Databases	DDBJ EMBL GenBank
Reference	Skriver K et al. (1992) Structure and expression of the barley lipid transfer protein gene LTP1 Plant Molecular Biology 18:585-589. Mundy J and Rogers JC (1986) Selective expression of a probable Amylase-protease inhibitor in barley Hordeum-vulgare aleurone cells comparison to the barley Amylase-subtilisin inhibitor Planta 169:51-63.
General Remarks	ORF 351 bp interrupted by 133 bp intron. Original cDNA sequence published in Planta is identical to the ORF sequence determined from the genomic clone. Appears to be a single copy gene. However, several weakly hybridizing bands indicate that there are other related sequences in the barley genome.
Sequence	X60292
Linkage Group	Barley 7 (5H), near centromere
Source Gene Class	Lipid transfer protein
Source Gene	Ltp1 (Hordeum)
Source Species	Hordeum vulgare
Insert Size	0.6